Education

2013 - 2016
Ecology Thesis EPHECEFE : Déterminants de la structure des communautés fongiques dans les forêts de Corse : Rôle des perturbations et de la composition forestière.
Edited by C. Carcaillet" and F. Richard.
2012–2013
Master 2 EGB (Environment and Biodiversity Management) at the École Pratique des Hautes Études
2010–2012
Master's degree in BEE (Biodiversity Ecology Evolution) - University of Montpellier
2007–2010
BO Bachelor's Degree (Organism Biology) – University of Nantes (L1–L2) & Montpellier (L3)

Online Training

Details of online training courses taken

Training Time (in hours estimated by training organizations) Organizations Year
Responsive Web Design Certification 50 FreeCodeCamp 2016-19
Learn to learn 6 Openclassroom 2018
Managing your domain name 4 Openclassroom 2018
Simplify your life with less 2 Openclassroom 2018
Learn how to create with GIMP 2.8! 20 Openclassroom 2019
Use advanced CSS effects on your website 6 Openclassroom 2019
Discover object-oriented programming with Python 6 Openclassroom 2019
Get started in computer graphics with GIMP! 1 Openclassroom 2019
Get started with accounting 4 Openclassroom 2019
Restore and perfect your sketches with Inkscape! 2 Openclassroom 2019
UX design: discover the fundamentals! 8 Openclassroom 2019
Layout with InDesign 10 Openclassroom 2019
Start your project with Python 4 Openclassroom 2019
Improve the impact of your presentations 8 Openclassroom 2019
Create a modern and professional website with WordPress 5 15 Openclassroom 2019
Get to grips with Bootstrap 10 Openclassroom 2019
Take back control with Linux! 30 Openclassroom 2019
Learn how to create your website with HTML5 and CSS3 20 Openclassroom 2019
Create visuals with Illustrator 10 Openclassroom 2019
Get started with Design Thinking 6 Openclassroom 2019
Use REST APIs in your web projects 6 Openclassroom 2019
Launch your freelance business 4 Openclassroom 2019
Introduction to R 4 Datacamp 2019
Intro to SQL for Data Science 4 Datacamp 2019
Intermediate R 6 Datacamp 2019
Joining Data in SQL 5 Datacamp 2019
Introduction to Git for Data Science 4 Datacamp 2019
Data Scientist with R (Course) 89 Datacamp 2019
Vue.js Fundamentals 0.5 vueschool.io 2019
Nuxt.js Fundamentals 1 vueschool.io 2019
TOTAL 345

Skills

Bioinformatics

  • Proficiency in R, Inkscape, Linux, Latex, and various metagenomics software
  • Good knowledge of HTML5 and CSS3
  • Basic knowledge of Python, Git, and Bash
  • Creation and maintenance of the R package cati CRAN Total CRAN by month

Visualization

  • Proficiency in R, Inkscape, and numerous R visualization packages,
  • Good knowledge of the R package ggplot2 package and the htmlwidgets packages,
  • Basic knowledge of JavaScript,
  • Several dozen figures, some of which are interactive (see the portfolio).

Bio-statistics

  • Extensive experience in using statistics in biology,
  • Experience teaching biostatistics from Bachelor's 1 to Bachelor's 3 at the UM,
  • Good knowledge of univariate and multivariate analyses.

Complex data analysis

  • Proficiency in R and numerous analysis packages,
  • Good knowledge of interaction network analysis,
  • Extensive experience in complex data analysis (see my publications),
  • Basic knowledge of artificial intelligence.

Collective Commitments

2013 - 2017
Organization of student seminars at the CEFE and facilitation of seminars in epistemology, statistics, and computer science.
2013–2016
Student representative at the SVT section assembly of the EPHE and in the biotic interactions team of the CEFE.
2009–2013
Member of the board (4 years) and treasurer (2 years) of the Montpellier University Naturalist Group.

Teaching

2020 - 2024
High school teacher of computer science and digital technology (SNT in 10th grade, NSI in 11th and 12th grades) at the alternative high school Scholae.
2018 - 2022
Adjunct professor at Paul Valery Montpellier 3 University and Montpellier University. Participation in 7 teaching units (UEs) — mainly in Ecology, Biology and Scientific Cultures (see teaching details).
2015 - 2017
Co-supervision of Master's internships: Océane Cobelli (M1 IEGB - University of Montpellier), Anne Voyer (CÉGEP Forest Management and Environment forestiers - Laval University, Quebec), Ananda Christophe (M1 EcoSystèmeS - University of Montpellier) & Corentin Leurent (M2 Darwin - University of Montpellier).
2015 - 2017
Facilitation of a training day CNRS on metagenomic data analysis.
2013–2017
Teaching assistant (3 years) then ATER (1 year) at the University of Montpellier. Participation in 14 TUs — mainly in Ecology, Statistics, and Mycology — for a total of 296 hours.

Détails des unités d'enseignements (in french)

Année Université Code UE Détails Responsables Niveau Heures
2013-2014 UM FMOB105 TD Métacommunautés + Neutralité F. Munoz M1 6
| UM FMOB317 Semaine de terrain Écologie environnement sociétés O. Thaller M2 20
| UM GMBE10E CM + TD Diversité et biogéographie des écosystèmes D. McKey M1 3
| UM GLBE203 TD Génétique P. Labbé L1 16,5
| UM GLBE610 TP Mycologie F. Richard L3 27
2014-2015 UM FMOB105 TP + TD Métacommunautés + neutralité F. Munoz M1 12
| UM GMBE10E CM + TD Diversité et biogéographie des écosystèmes D. McKey M1 3
| UM HLBE518 CM + TD Interactions sols organismes T. Decaens L3 13
| UM HLBE510 Projet tutoré V. Girard L3 12
| UM HLBE201 TD Cycles de vie des organismes P. Labbé L1 12
| UM HLBE603 TP Spermaphytes : phylogénie et floristique J.F. Terral L3 12
2015-2016 UM HMBE3A2 TD Analyse d'articles interactions plantes/animaux R. Manlay M1 12
| UM HMBE105 TP + TD Écologie des Populations, communautés S. Maurice M1 12
| UM HMBE108 CM + TD Diversité et biogéographie des écosystèmes D. McKey M1 12
| UM HLBE512 TP Mycologie + Sortie Mycologie F. Richard L3 12
| UM HMBE109 Sortie Écologie et société C. Petit M1 18
2016-2017 UM HMBE101 TD Bases en traitement de données biologiques B. Mérigot M1 25
| UM HMBE105 TP + TD Écologie des Populations, communautés S. Maurice M1 9
| UM HMBE108 CM + TD Diversité et biogéographie des écosystèmes D. McKey M1 21,5
| UM HLBE101 CM + TD Biologie Intégrative J-H. Lignot L1 16,5
| UM HMBE3A2 TD analyse article interactions plantes/animaux R. Manlay M1 12
| UM HMBS123 TD Bio-statistique J. Claude M1 10
2018-2019 UPVM E23Bi5 CM méiose (Biologie Appliquée à la Psychologie) L. Dormont L3 27
| Sup Agro UE-3 CM : La méthode scientifique B. Righetti L3 pro 7
2019-2020 UPVM E23Bi5 CM méiose (Biologie Appliquée à la Psychologie) L. Dormont L3 27
| UPVM E11BI5 CM : Écologie et conservation P. Jay-Robert L1 27
| UPVM V14PMV5 CM + TD : Écologie et conservation du patrimoine naturel A. Vergnes M1 15
| UPVM W212PMV5 CM + TD : Écologie et conservation du patrimoine naturel A. Vergnes M1 15
| Sup Agro UE-3 CM : La méthode scientifique B. Righetti L3 pro 7
| UM HMBE3D6 Animation de travail en groupe F. Richard M1 8
| UM HMBE105 Encadrement terrain + TD F. Richard M1 16
| UM HMBE105 Encadrement terrain + TD F. Richard M1 16
2020-2021 UPVM E23Bi5 CM méiose (Biologie Appliquée à la Psychologie) L. Dormont L3 27
| Sup Agro UE-3 CM : La méthode scientifique B. Righetti L3 pro 14
| UPVM E11BI5 CM : Écologie et conservation P. Jay-Robert L1 27
| UPVM V14PMV5 CM + TD : Écologie et conservation du patrimoine naturel A. Vergnes M1 15
| UPVM W212PMV5 CM + TD : Écologie et conservation du patrimoine naturel A. Vergnes M1 15
2021-2022 UPVM E23Bi5 CM méiose (Biologie Appliquée à la Psychologie) L. Dormont L3 27
| Sup Agro UE-3 CM : La méthode scientifique B. Righetti L3 pro 14
| UPVM E11BI5 CM : Écologie et conservation P. Jay-Robert L1 27
| UPVM V14PMV5 CM + TD : Écologie et conservation du patrimoine naturel A. Vergnes M1 15
| UPVM W212PMV5 CM + TD : Écologie et conservation du patrimoine naturel A. Vergnes M1 15
2022-2023
| Sup Agro UE-3 CM : La méthode scientifique B. Righetti L3 pro 4
2023-2024
| Sup Agro UE-3 CM : La méthode scientifique B. Righetti L3 pro 4
2024-2025
| Sup Agro UE-3 CM : La méthode scientifique B. Righetti L3 pro 4
Total 653

Oral Communications

Conférence internationale / Conférence grand public

2017

  • Journée d'échange du Conservatoire Botanique National de Corse — Corti : De l'aiguille à la racine : Les enjeux souterrains de la flore de Corse.
  • Séminaire — SLU-Uppsala (Suède) : Drivers of fungal community composition in Corsican forests: role of perturbations and vegetation composition
  • Journée du CEFE — Montpellier : Chercher des champignons dans une botte d'aiguilles : diversité des Ascomycètes endophytes du pin laricio
  • Séminaire — Lille : Diversité des endophytes fongiques du pin laricio.
  • R user group du CEFE - Montpellier : Créer un package R
  • ICOM 9 — Prague (République Tchèque) : Fire effect on ectomycorrhizal symbiosis: Lessons for biological conservation

2016

  • Fête de la truffe de Claret — Claret : Diversité des relations arbres-champignons
  • Journée des doctorants du CEFE — Montpellier : Les mycorhizes passent à la casserole : histoire d'un mutualisme tout feu tout flamme

2015

  • Conférences aux congrès mycologiques d'Ajaccio — Porticcio : Mesurer la diversité fongique autrement
  • Réunion département interactions biotiques du CEFE — Valleraugue : Quels liens entre ancienneté de la forêt et diversité fongique ? Leçons issues de la distribution d'une rareté mondialement distribuée, Xylobolus subpileatus.
  • Journée Écologie des communautés du CEFE — Montpellier : Introduction de la session sur les réseaux d'interactions

2014

  • Journée des doctorants du CEFE — Montpellier :CATI fille de l'R, 9 mois de gestation, 3000 lignes de code: Tester l'assemblage des communautés par les traits des individus.

2013

  • Colloque Network DynamicsMontpellier : Présentation du poster Beyond Common Mycorrhizal Networks: interspecific interaction networks underlying ectomycorrhizal community ecology

International Publications

2025

Battie-Laclau P, Taudière A et al. 2025. Terroir and farming practices drive arbuscular mycorrhizal fungal communities in French vineyards. Front. Microbiol. 15

2024

Boulanger L et al. 2024. The Poultry Red Mite, Dermanyssus gallinae, travels far but not frequently, and takes up permanent residence on farms. Infection, Genetics and Evolution. 120, 6038

Authier L et al. 2024. After-sealing life in urban soils: Experimental evidence of resilience and efficiency of ectomycorrhizal inoculation. Landscape and Urban Planning. 251, 105149

2023

Taudière A. 2023. MiscMetabar: an R package to facilitate visualization and reproducibility in metabarcoding analysis The Journal of Open Source Software. 8(92), 6038

Perret J, Cobelli O, Taudière A [...] & Richard F. 2023. Time to refine the geography of biodiversity hotspots by integrating molecular data: The Mediterranean Basin as a case study. Biological Conservation. 284 minilogo

Taschen E et al. 2023. Wheat varietal diversity affects arbuscular mycorrhizal symbiosis and soil enzymatic activities in the root zone. Plant and Soil minilogo

2022

Auffray T, Arriaga-Jiménez A, Taudière A [...] & Roy L. 2022. Attractant Activity of Host-Related Chemical Blends on the Poultry Red Mite at Different Spatial Scales. J Chem Ecol. minilogo

Masier S, Taudière A, Roy LJ, Carrasco D, Barnagaud JY, Planchon C, [...] & Roy L. 2022. High-throughput behavioral phenotyping of tiny arthropods: Chemosensory traits in a mesostigmatic hematophagous mite. Journal of Experimental Zoology Part A: Ecological and Integrative Physiology. minilogo

2020

Roy L, Taudière A, Papaïx J, Blatrix R, Chiron G, Zriki G, [...] & Barnagaud J-Y. 2020. Evaluating the link between predation and pest control services in the mite world. Ecology and evolution, 10(18), 9968-9980. minilogo

Laroche F, Violle C, Taudière A, Munoz F. 2020. Analyzing snapshot diversity patterns with the Neutral Theory can show functional groups' effects on community assembly. Ecology n/a, e02977. minilogo

Battie-Laclau P, Taschen E, Plassard C, Dezette D, Abadie J, Arnal D, Benezech P, Duthoit M, Pablo A.-L, Jourdan C, Laclau JP, Bertrand I, Taudière A and Hinsinger P. 2020. Role of trees and herbaceous vegetation beneath trees in maintaining arbuscular mycorrhizal communities in temperate alley cropping systems. Plant Soil 453, 153-171. minilogo

2018

Zamora et al. 2018. Considerations and consequences of allowing DNA sequence data as types of fungal taxa. IMA Fungus 9, 167-175 minilogo

Taudière A, Bellanger J-M, Carcaillet C, Hugot L, Kjellberg F, Lecanda A, Lesne A, Moreau P-A, Scharmann K, Leidel S and Richard F. 2018. Diversity of foliar endophytic ascomycetes in the endemic Corsican pine forests. Fungal Ecology, 36, 128-140. minilogo

Munoz F, Grenié M, Denelle P, Taudière A, Laroche F, Tucker C & Violle C. 2018. ecolottery: simulating and assessing community assembly with environmental filtering and neutral dynamics in R. Methods in Ecology and Evolution minilogo

2017

Taudière A, Bellanger J-M, Moreau P-A, Carcaillet C, Christophe A, Læssøe T, Panaïotis C and Richard F. 2017. Xylobolus subpileatus, a specialized basidiomycete functionally linked to old canopy gaps. Canadian Journal of Forest Research minilogo

Taudière A, Richard F, Carcaillet C. Review on fire effects on ectomycorrhizal symbiosis, an unachieved work for a scalding topic. Forest Ecology and Management 391: 446-457. minilogo

Ebenye HCM, Taudière A et al.. 2017. Generalist ectomycorrhizal fungi are shared between seedlings and adults in a Monodominant Gilbertiodendron dewevrei Cameroon Rainforest. Biotropica 49: 256-267. minilogo

2016

Courty P-E, […], Taudière A, Garbaye J & Richard F. 2016. Into the functional ecology of ectomycorrhizal communities: environmental filtering of enzymatic activities. Journal of Ecology 104: 1585-1598. minilogo

Taudière A, Violle C. 2016. cati: an R package using functional traits to detect and quantify multi-level community assembly processes. Ecography 39: 699-708. minilogo minilogo

2015

Siefert A, Violle C, Chalmandrier L, Albert CH, Taudière A, Fajardo A, et al. 2015. A global meta-analysis of the relative extent of intraspecific trait variation in plant communities. Ecology Letters 18: 1406-1419. minilogo

Taschen E, Sauve M, Taudière A, Parlade J, Selosse M-A, Richard F. 2015. Whose truffle is this? Distribution patterns of ectomycorrhizal fungal diversity in Tuber melanosporum brûlés developed in multi-host Mediterranean plant communities. Environmental Microbiology 17: 2747-2761. minilogo

Taudière A, Munoz F, Lesne A, Monnet A-C, Bellanger J-M, Selosse M-A, Moreau P-A, Richard F. 2015. Beyond ectomycorrhizal bipartite networks: projected networks demonstrate contrasted patterns between early- and late-successional plants in Corsica. Frontiers in Plant Science 6. minilogo

2014

Bender SF, Valadares RB da S, Taudière A. 2014. Mycorrhizas: dynamic and complex networks of power and influence. New Phytologist 204: 15-18. minilogo

Publications in french

2025

Gauberville C, Bioret F, et Panaïotis C (sous la dir.). U làriciu: Sentinelle des forêts de Corse. Albiana

2018

Taudière A. 2018. Déterminants de la structure des communautés fongiques dans les forêts de Corse : rôle des perturbations et de la composition forestière. Bois et Forêts des Tropiques, 334, 75-76

2017

Hugot L, Delbosc P., Panaiotis C., Richard F, Taudière A, Tomasi F, Médail F. 2017. Châtaigner et végétations associées : des relations dynamiques. Bulletins de la Company Botanique du Centre Ouest.

2016

Taudière A. 2016. Déterminants de la structure des communautés fongiques dans les forêts de Corse : Rôle des perturbations et de la composition forestière. Rapport de thèse, École Pratique des Hautes Études.

2014

Collectif. 2014. Petit guide naturaliste de la faculté de science. Faculté des sciences de Montpellier, 118 p. ISBN: 978-2-7466-6112-7.